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cobra toolbox version 3 0  (MathWorks Inc)


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    MathWorks Inc cobra toolbox version 3 0
    Cobra Toolbox Version 3 0, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 282 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cobra+toolbox+version+3%2E0/Partial+Differential+Equation+Toolbox/pmc10967962-89-7-16
    Average 96 stars, based on 282 article reviews
    cobra toolbox version 3 0 - by Bioz Stars, 2026-09
    96/100 stars

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    Related Articles

    Combined Bisulfite Restriction Analysis Assay:

    Article Title: Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta
    Article Snippet: Reconstructions were analyzed using the Cobra Toolbox version 3.0 [ ] in Matlab version 2018b, with the IBM Cplex solver version 128.

    Article Title: Linear programming based gene expression model (LPM-GEM) predicts the carbon source for Bacillus subtilis
    Article Snippet: The Cobra toolbox version 3.0 and Matlab version R2019a ( www.mathworks.com ) were used to obtain the initial stoichiometric matrix, lower and upper bounds, reversibility information, metabolite and reaction names from the initial metabolic network, and benchmarking flux predictions from iMAT, mCADRE and pFBA (see Results).

    Article Title: Drought Stress Responses in Context-Specific Genome-Scale Metabolic Models of Arabidopsis thaliana
    Article Snippet: The FBA was performed using COBRA toolbox version 3.0 in MATLAB (version 9.5-R2018b) [ ].

    Control:

    Article Title: Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta
    Article Snippet: Reconstructions were analyzed using the Cobra Toolbox version 3.0 [ ] in Matlab version 2018b, with the IBM Cplex solver version 128.

    Article Title: Linear programming based gene expression model (LPM-GEM) predicts the carbon source for Bacillus subtilis
    Article Snippet: The Cobra toolbox version 3.0 and Matlab version R2019a ( www.mathworks.com ) were used to obtain the initial stoichiometric matrix, lower and upper bounds, reversibility information, metabolite and reaction names from the initial metabolic network, and benchmarking flux predictions from iMAT, mCADRE and pFBA (see Results).

    Article Title: Drought Stress Responses in Context-Specific Genome-Scale Metabolic Models of Arabidopsis thaliana
    Article Snippet: The FBA was performed using COBRA toolbox version 3.0 in MATLAB (version 9.5-R2018b) [ ].



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    Image Search Results


    Journal: iScience

    Article Title: Genome-scale modeling predicts metabolic differences between macrophage subtypes in colorectal cancer

    doi: 10.1016/j.isci.2023.107569

    Figure Lengend Snippet:

    Article Snippet: We integrated the RNA sequencing data into the Recon3D model of human metabolism using the constraint-based reconstruction and analysis (COBRA) Toolbox (version 3.0, implemented in MATLAB [Mathworks, Inc.]).

    Techniques: Generated, Software, Combined Bisulfite Restriction Analysis Assay